Implement Variational Autoencoders Using TensorFlow: A Beginner Guide
Machine Learning
Implement Variational Autoencoders Using TensorFlow: A Beginner Guide

5 “Auto-Encoding Variational Bayes,” D. Kingma and M. Welling (2014).

Another important category of autoencoders was introduced in 2014 by Diederik

Kingma and Max Welling,5 and has quickly become one of the most popular types of

autoencoders: variational autoencoders.

They are quite different from all the autoencoders we have discussed so far, in partic‐


• They are probabilistic autoencoders, meaning that their outputs are partly deter‐

mined by chance, even after training (as opposed to denoising autoencoders,

which use randomness only during training).

• Most importantly, they are generative autoencoders, meaning that they can gener‐

ate new instances that look like they were sampled from the training set.

Both these properties make them rather similar to RBMs (see Appendix E), but they

are easier to train and the sampling process is much faster (with RBMs you need to

wait for the network to stabilize into a “thermal equilibrium” before you can sample a

new instance).

6 Variational autoencoders are actually more general; the codings are not limited to Gaussian distributions.

Let’s take a look at how they work. Figure 15-11 (left) shows a variational autoen‐

coder. You can recognize, of course, the basic structure of all autoencoders, with an

encoder followed by a decoder (in this example, they both have two hidden layers),

but there is a twist: instead of directly producing a coding for a given input, the

encoder produces a mean coding μ and a standard deviation σ. The actual coding is

then sampled randomly from a Gaussian distribution with mean μ and standard devi‐

ation σ. After that the decoder just decodes the sampled coding normally. The right

part of the diagram shows a training instance going through this autoencoder. First,

the encoder produces μ and σ, then a coding is sampled randomly (notice that it is

not exactly located at μ), and finally this coding is decoded, and the final output

resembles the training instance.

Figure 15-11. Variational autoencoder (left), and an instance going through it (right)

As you can see on the diagram, although the inputs may have a very convoluted dis‐

tribution, a variational autoencoder tends to produce codings that look as though

they were sampled from a simple Gaussian distribution:6 during training, the cost

function (discussed next) pushes the codings to gradually migrate within the coding

space (also called the latent space) to occupy a roughly (hyper)spherical region that

looks like a cloud of Gaussian points. One great consequence is that after training a

7 For more mathematical details, check out the original paper on variational autoencoders, or Carl Doersch’s

great tutorial (2016).

variational autoencoder, you can very easily generate a new instance: just sample a

random coding from the Gaussian distribution, decode it, and voilà!

So let’s look at the cost function. It is composed of two parts. The first is the usual

reconstruction loss that pushes the autoencoder to reproduce its inputs (we can use

cross entropy for this, as discussed earlier). The second is the latent loss that pushes

the autoencoder to have codings that look as though they were sampled from a simple

Gaussian distribution, for which we use the KL divergence between the target distri‐

bution (the Gaussian distribution) and the actual distribution of the codings. The

math is a bit more complex than earlier, in particular because of the Gaussian noise,

which limits the amount of information that can be transmitted to the coding layer

(thus pushing the autoencoder to learn useful features). Luckily, the equations sim‐

plify to the following code for the latent loss:7

eps = 1e-10 # smoothing term to avoid computing log(0) which is NaN

latent_loss = 0.5 * tf.reduce_sum(

tf.square(hidden3_sigma) + tf.square(hidden3_mean)

- 1 - tf.log(eps + tf.square(hidden3_sigma)))

One common variant is to train the encoder to output γ = log(σ2) rather than σ.

Wherever we need σ we can just compute σ = exp


2 . This makes it a bit easier for

the encoder to capture sigmas of different scales, and thus it helps speed up conver‐

gence. The latent loss ends up a bit simpler:

latent_loss = 0.5 * tf.reduce_sum(

tf.exp(hidden3_gamma) + tf.square(hidden3_mean) - 1 - hidden3_gamma)

The following code builds the variational autoencoder shown in Figure 15-11 (left),

using the log(σ2) variant:

n_inputs = 28 * 28 # for MNIST

n_hidden1 = 500

n_hidden2 = 500

n_hidden3 = 20 # codings

n_hidden4 = n_hidden2

n_hidden5 = n_hidden1

n_outputs = n_inputs

learning_rate = 0.001

with tf.contrib.framework.arg_scope(




X = tf.placeholder(tf.float32, [None, n_inputs])

hidden1 = fully_connected(X, n_hidden1)

hidden2 = fully_connected(hidden1, n_hidden2)

hidden3_mean = fully_connected(hidden2, n_hidden3, activation_fn=None)

hidden3_gamma = fully_connected(hidden2, n_hidden3, activation_fn=None)

hidden3_sigma = tf.exp(0.5 * hidden3_gamma)

noise = tf.random_normal(tf.shape(hidden3_sigma), dtype=tf.float32)

hidden3 = hidden3_mean + hidden3_sigma * noise

hidden4 = fully_connected(hidden3, n_hidden4)

hidden5 = fully_connected(hidden4, n_hidden5)

logits = fully_connected(hidden5, n_outputs, activation_fn=None)

outputs = tf.sigmoid(logits)

reconstruction_loss = tf.reduce_sum(

tf.nn.sigmoid_cross_entropy_with_logits(labels=X, logits=logits))

latent_loss = 0.5 * tf.reduce_sum(

tf.exp(hidden3_gamma) + tf.square(hidden3_mean) - 1 - hidden3_gamma)

cost = reconstruction_loss + latent_loss

optimizer = tf.train.AdamOptimizer(learning_rate=learning_rate)

training_op = optimizer.minimize(cost)

init = tf.global_variables_initializer()

Generating Digits

Now let’s use this variational autoencoder to generate images that look like handwrit‐

ten digits. All we need to do is train the model, then sample random codings from a

Gaussian distribution and decode them.

import numpy as np

n_digits = 60

n_epochs = 50

batch_size = 150

with tf.Session() as sess:

for epoch in range(n_epochs):

n_batches = mnist.train.num_examples // batch_size

for iteration in range(n_batches):

X_batch, y_batch = mnist.train.next_batch(batch_size), feed_dict={X: X_batch})

codings_rnd = np.random.normal(size=[n_digits, n_hidden3])

outputs_val = outputs.eval(feed_dict={hidden3: codings_rnd})

That’s it. Now we can see what the “handwritten” digits produced by the autoencoder

look like (see Figure 15-12):

for iteration in range(n_digits):

plt.subplot(n_digits, 10, iteration + 1)


Figure 15-12. Images of handwritten digits generated by the variational autoencoder

A majority of these digits look pretty convincing, while a few are rather “creative.” But

don’t be too harsh on the autoencoder—it only started learning less than an hour ago.

Give it a bit more training time, and those digits will look better and better.